融合基因预测

本例中使用pvactools预测新抗原

环境：python3、pvactools预测软件、hlahd分型软件

STAR-Fusion安装

#安装jellyfish
wget https://github.com/gmarcais/Jellyfish/releases/download/v2.2.10/jellyfish-2.2.10.tar.gz && \
tar xvf jellyfish-2.2.10.tar.gz && \
cd jellyfish-2.2.10/ && \
./configure && make && make install
#安装bowite2
wget https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.3.3.1/bowtie2-2.3.3.1-linux-x86_64.zip/download -O bowtie2-2.3.3.1-linux-x86_64.zip && \
unzip bowtie2-2.3.3.1-linux-x86_64.zip && \
mv bowtie2-2.3.3.1-linux-x86_64/bowtie2* /usr/local/bin/ && \
rm *.zip && \
rm -r bowtie2-2.3.3.1-linux-x86_64

#安装samtools
SAMTOOLS_URL="https://github.com/samtools/samtools/releases/download/1.9/samtools-1.9.tar.bz2" && \
cd /usr/local/ && \
wget $SAMTOOLS_URL && \
tar xvf samtools-1.9