circos报错处理： ...error text from [errorconfiguration.missing.txt] could not be read

circos: …error text from [error/configuration.missing.txt] could not be read…

详细报错

[email protected]:~/CKX/gene_duplication/circos$ circos -conf circos.conf

debuggroup summary 0.12s welcome to circos v0.69-6 31 July 2017 on Perl 5.026001
debuggroup summary 0.12s current working directory /home/lzn/CKX/gene_duplication/circos
debuggroup summary 0.12s command /usr/bin/circos -conf circos.conf
debuggroup summary 0.12s loading configuration from file circos.conf
debuggroup summary 0.12s found conf file circos.conf
debuggroup summary 0.21s debug will appear for these features: output,summary
debuggroup summary 0.21s bitmap output image ./circos.png
debuggroup summary 0.21s SVG output image ./circos.svg
debuggroup summary 0.21s parsing karyotype and organizing ideograms
debuggroup summary 0.22s karyotype has 10 chromosomes of total size 2,106,338,127
debuggroup summary 0.22s applying global and local scaling
debuggroup summary 0.22s allocating image, colors and brushes
debuggroup summary 1.28s drawing 10 ideograms of total size 2,106,338,127
debuggroup summary 1.28s drawing highlights and ideograms
Redundant argument in sprintf at /usr/share/perl5/Circos/Error.pm line 364.

*** CIRCOS ERROR ***

  cwd: /home/lzn/CKX/gene_duplication/circos

  command: /usr/bin/circos -conf circos.conf

CONFIGURATION FILE ERROR

…error text from [error/configuration.missing.txt] could not be read…

If you are having trouble debugging this error, first read the best practices
tutorial for helpful tips that address many common problems

  http://www.circos.ca/documentation/tutorials/reference/best_practices

The debugging facility is helpful to figure out what’s happening under the
hood

  http://www.circos.ca/documentation/tutorials/configuration/debugging

If you’re still stumped, get support in the Circos Google Group.

  http://groups.google.com/group/circos-data-visualization

Please include this error, all your configuration, data files and the version
of Circos you’re running (circos -v).Do not email me directly – please use
the group.

Stack trace:
at /usr/share/perl5/Circos/Error.pm line 425.
Circos::Error::fatal_error(“configuration”, “missing”, “etc/tracks/link.conf”) called at /usr/share/perl5/Circos/Configuration.pm line 796
Circos::Configuration::loadconfiguration(“etc/tracks/link.conf”, 1) called at /usr/share/perl5/Circos/Track.pm line 223
Circos::Track::assign_defaults(ARRAY(0x562eee83fa60), HASH(0x562ef1b37bc0)) called at /usr/share/perl5/Circos/Track.pm line 152
Circos::Track::make_tracks(HASH(0x562eeecfef58), HASH(0x562ef1b37bc0), “link”) called at /usr/share/perl5/Circos.pm line 1154
Circos::run(“Circos”, “configfile”, “circos.conf”, “_argv”, “-conf circos.conf”, “_cwd”, “/home/lzn/CKX/gene_duplication/circos”) called at /usr/bin/circos line 538

报错原因

circos版本bug，缺少configuration.missing.txt。

解决办法

• 在当前工作目录创建error文件夹，并将configuration.missing.txt放入其中。
• 在circos安装目录创建error文件夹，并将configuration.missing.txt放入其中。

文件

百度云

链接: https://pan.baidu.com/s/1fyqtlagnqiuds6_4Wtu7Vw 提取码: enja